ee

Website WWW

OTHER LINKS

List of open source journals

Pectinase Industries

Pectinase Research Institutes

 

 

List of Known Structures

                                                                                       
 

Source

Structure Description

PDB File

Accession No.

Arabidopsis thaliana

Structural insights into the target specificity of plant invertase and pectin methylesterase inhibitory proteins

1X91 

1X91

1X90 

1X90

1X8Z 

1X8Z

Aspergillus aculeatus

 Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4

1NKG 

1NKG

 The X-ray structure of Aspergillus aculeatus polygalacturonase and a modeled structure of the polygalacturonase-octagalacturonate complex

 

1IB4  

1IB4

1IA5 

1IA5

Aspergillus niger

Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger

1NHC

1NHC

1.68-A crystal structure of endopolygalacturonase II from Aspergillus niger and identification of active site residues by site-directed mutagenesis

 1CZF

1CZF

The tree-dimensional structure of aspergillus niger pectin lyase B at 1.7-A resolution

1QCX  

1QCX

Two crystal structures of pectin lyase A from Aspergillus reveal a pH driven conformational change and striking divergence in the substrate-binding clefts of pectin and pectate lyases

1IDJ  

1IDJ

Two crystal structures of pectin lyase A from Aspergillus reveal a pH driven conformational change and striking divergence in the substrate-binding clefts of pectin and pectate lyases

1IDK 

1IDK

Azospirillum irakense

Azospirillum irakense pectate lyase displays a toroidal fold

1R76  

1R76

Bacillus licheniformis

 

The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products

 

1UR4 

1UR4

1UR0 

1UR0

Bacillus sp.

Crystallization and preliminary X-ray analysis of high-alkaline pectate lyase

1EE6 

1EE6

Bacillus sp. TS-47

Structure Of The Thermostable Pectate Lyase Pl 47

1VBL   

1VBL

Bacillus subtilis

The structure of Bacillus subtilis pectate lyase in complex with calcium

1BN8

1BN8

Bacillus subtilis

Bacillus Subtilis Pectate Lyase R279k Mutant.

2BSP 

2BSP

Cellvibrio japonicus

Convergent evolution sheds light on the anti-beta -elimination mechanism common to family 1 and 10 polysaccharide lyases

1GXO 

1GXO

1GXN 

1GXN

1GXM  

1GXM

Daucus carota

Crystal structure of plant pectin methylesterase 

1GQ8 

1GQ8

Erwinia chrysanthemi

Three-dimensional structure of Erwinia chrysanthemi pectin methylesterase reveals a novel esterase active site

1QJV   

1QJV

Structure of a plant cell wall fragment complexed to pectate lyase C

2EWE  

2EWE

The crystal structure of pectate lyase Pel9A from Erwinia chrysanthemi

1RU4  

1RU4

Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16

 

1PE9 

1PE9

1OOC 

1OOC

Characterization and implications of Ca2+ binding to pectate lyase C

1O8M 

1O8M

1O8L 

1O8L

1O8K 

1O8K

1O8J 

1O8J

1O8I   

1O8I

1O8H

1O8H

1O8G 

1O8G

1O8F   

1O8F

1O8E 

1O8E

1O8D    

1O8D

1O88  

1O88

Structure of pectate lyase A: comparison to other isoforms

 

1JTA

1JTA

1JRG

1JRG

Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site

1PLU 

1PLU

Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A Resolution Of 2.2 Angstroms With 128 Waters

1AIR 

1AIR

 Protein motifs. 3. The parallel beta helix and other coiled folds

2PEC  

2PEC

 Unusual structural features in the parallel beta-helix in pectate lyases

1PCL  

1PCL

Escherichia coli

X-Ray Structure Of Pectin Degrading Enzyme 5-Keto 4- Deoxyuronate Isomerase From Escherichia Coli

1X8M  

1X8M

Gibberella fujikuroi

Structural requirements of endopolygalacturonase for the interaction with PGIP (polygalacturonase-inhibiting protein)

1HG8  

1HG8

Pectobacterium carotovorum subsp. carotovorum

Crystal structure of polygalacturonase from Erwinia carotovora ssp. carotovora

1BHE  

1BHE

Phaseolus vulgaris

The crystal structure of polygalacturonase-inhibiting protein (PGIP), a leucine-rich repeat protein involved in plant defense

1OGQ  

1OGQ

Solanum lycopersicum

Structural basis for the interaction between pectin methylesterase and a specific inhibitor protein

1XG2 

1XG2

Yersinia enterocolitica

Structure Of A Periplasmic Oligogalacturonide Binding Protein From Yersinia Enterocolitica In Complex With 4,5- Unsaturated Digalacturonic Acid

2UVI

2UVI

Structure Of A Periplasmic Oligogalacturonide Binding Protein From Yersinia Enterocolitica In Complex With Saturated Digalacturonic Acid

2UVH 

2UVH

Identification and Characterization of a Novel Periplasmic Polygalacturonic Acid Binding Protein from Yersinia enterolitica

 

2JDA 

2JDA

2JD9  

2JD9

                           (Best Viewed in Internet Explorer)                                                 

   

 

                                                                      
 
e
      Next

 

Pectinase       Classification       Analysis       Tools       Applications       Tutorials

 

All Rights Reserved, Maintained by R.R. Siva Kiran, MSRIT, Bangalore, India E-mail: rrskiran@msrit.edu

Last update: 05-July-2007